Sample quality
The quality of the data collected in single-pass sequencing service is highly dependent upon the quality of your DNA preparation which we do not control. Please take all necessary actions to provide us with a DNA template that is:
(i) accurately quantified
(ii) adequately prepared for enzymatic sequencing reactions
Sample quantity
Single Pass Service : sample quantities for one reaction
| DNA |
Concentration (minimum) |
Volume* (minimum) |
| Plasmid |
100 ng/µl |
20 µl |
| Purified PCR fragment |
25 ng/µl |
20 µl |
| PCR crude mix |
>75 ng/µl |
20 µl |
| Provided primer |
10 µM (10 pmol/µl) |
10 µl |
(*) Sterile dH2O is recommended.
Sample vialing and labeling
If at all possible, please aliquot your DNA and primers into 1.5 ml microfuge tubes. We are sorry but we do not accept tube strips. DNA templates and primers should be sent in separate tubes.
Microtiter plates: 96-well plates are accepted. Please standardize DNA concentration across the wells as indicated above and cap securely the plates.
DNA templates and primers should be sent in separate plates. In addition, you should use separate plates for crude PCR mixes that require purification and ready to sequence, purified PCR fragments.
To avoid any errors on our part, we recommend that you use strictly identical sample references on tube labels and sample submission form.
Purification and DNA form
Plasmid DNA
Any commercially available column-based preparation kit will generate good template for sequencing. Following mini-prep, plasmid DNA may be precipitated or solubilized in sterile dH2O and quantified by UV at 260 nm. Minimum concentration should be 0.1 µg/µl. In case of precipitation, a 70% ethanol wash of the pellet is critical for salt removal. TE buffer should be avoided.
Purified PCR fragment
The PCR reaction mixture should be separated by agarose gel electrophoresis. The band of interest should be cut out and the DNA fragment extracted (electroelution, commercial kits, etc.).
Dissolved in dH2O and quantified by UV at 260 nm, or by running an aliquot on minigel and comparing intensity against a control ladder. Minimum concentration should be 25 ng/µl. TE buffer should be avoided.
Crude PCR mix with a unique product/band
We can purify your PCR mixture for a nominal fee prior to sequencing as long as it has a unique product. If your PCR yields multiple products, you should separate and isolate the band of interest by agarose gel electrophoresis.
Cosmids, BACs
Please use commercially available column-based kits for isolation and purification of these large DNA molecules. Protocols should be very carefully applied to avoid chromosomal DNA carry over.
Solubilized in dH2O at a minimal concentration of 0.5 µg/µl.
Amounts required and insert size
| Insert size |
Single pass sequencing |
Full length sequencing |
| Plasmid (up to 5 kb) |
2 to 3 µg / reaction |
5 µg / 1.5 kb |
| PCR product (up to 2 kb) |
0.5 to 1 µg / reaction |
1 µg / kb |
| Cloned 5 to 10 kb |
5 µg |
30 µg |
| Cloned 10 to 20 kb |
5 to 10 µg |
50 µg |
| > 20 kb and BACs |
Please contact us |
Please contact us |
Provided primers
Provide us with: 10 µl of a 10 µM (10 pmol/µl) aqueous solution of your specific primer(s). Please indicate sequence of primer(s) sent. Please, no degenerate primers.
Final note
Samples are not returned and will be kept one month following your order before disposal.